PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0130s0023.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 365aa    MW: 41362 Da    PI: 10.0165
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0130s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.61.3e-1249139280
             trihelix   2 WtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegekkrtsessstc 79 
                          W  +e ++Li+a+r+ +e++  ++         ++k++We++++++ ++g+    r  + Ck+kw  ++k++k++ ++ek   ++++s +
  Mapoly0130s0023.1.p  49 WNLRELKVLIAAKRNEHEQSLLEQggseqakltSRKNKWEKIAQYVVKEGVcnpVRDGEACKKKWATVSKDFKRVYDHEKHVPAGQRSYW 138
                          99***********966665553222344556669************8888767679************************9866666666 PP

             trihelix  80 p 80 
                           
  Mapoly0130s0023.1.p 139 N 139
                          4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.31941117IPR017877Myb-like domain
PfamPF138377.4E-848140No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEPISRVPDS DVNDSIDGTE ESIKILHAIP ESSPANPPQP KVPQRARDWN LRELKVLIAA  60
KRNEHEQSLL EQGGSEQAKL TSRKNKWEKI AQYVVKEGVC NPVRDGEACK KKWATVSKDF  120
KRVYDHEKHV PAGQRSYWNM NTSERRKRSR PLNFPEELYR EMEEWLPKRM EEWPAKRLEG  180
TSQAPGPQRN GGESSKPLTL EALKTDTLFR PILPKGPANV FSPLLNAITP VDRAAANTPT  240
PDAGLDESIS TLPNTSPTKK NIVRDDRLKN KRKRTCNGAT RAMSEAVVKL VEVLKDDIVR  300
KNKHDEKAME WEKQHKTEHL ALLRDQMESR AKVEMVQAQS FNILAQALAK LVEKDNSNPN  360
NPNK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-10Trihelix family protein